Journal Publications:
- J. Qian, Y. Zhang, W. Wang, A. C. Lewis, M.A. S. Qidwai, A. B. Geltmacher.
Quality Improvement of Non-Manifold Hexahedral Meshes for Critical Feature Determination of Microstructure Materials.
International Journal for Numerical Methods in Engineering.
In press, 2009.
- Y. Bazilevs, M.-C. Hsu, Y. Zhang, W. Wang, X. Liang, T. Kvamsdal, R. Brekken, J. Isaksen.
A Fully-Coupled Fluid-Structure Interaction Simulation of Cerebral Aneurysms.
Computational Mechanics. In press, 2009.
- Y. Zhang, W. Wang, X. Liang, Y. Bazilevs, M.-C. Hsu, T. Kvamsdal, R. Brekken, J. Isaksen.
High Fidelity Tetrahedral Mesh Generation from Medical Imaging Data for Fluid-Structure Interaction Analysis of Cerebral Aneurysms.
Computer Modeling in Engineering & Sciences. 42(2):131-149, 2009.
- W. Wang, Y. Zhang.
Wavelets-based NURBS Simplification and Fairing.
Computer Methods in Applied Mechanics and Engineering (CMAME). In press, 2009.
- Y. Zhang, T. J.R. Hughes, C. L. Bajaj.
An Automatic 3D Mesh Generation Method for Domains with Multiple Materials.
Computer Methods in Applied Mechanics and
Engineering (CMAME). In press, 2009.
- Y. Bazilevs, J. R. Gohean, T. J.R. Hughes, R. D. Moser, Y. Zhang.
Patient-Specific Isogeometric Fluid-Structure Interaction Analysis of
Thoracic Aortic Blood Flow due to Implantation of the Jarvik 2000 Left
Ventricular Assist Device. Computer Methods in Applied Mechanics and
Engineering (CMAME). In press, 2009.
- Y. Zhang, C. Bajaj, G. Xu. Surface Smoothing and Quality
Improvement of Quadrilateral/Hexahedral Meshes with Geometric
Flow. The special issue of the Journal Communications in
Numerical Methods in Engineering (CNME). 25(1):1-18, 2009. (invited
paper) (pdf) (html)
- Y. Zhang, B. C. Cheng, C. Oh, J. L. Spehar, J. Burgess.
Dynamic Neural Foramina Cross Section Measurement and Kinematic
Analysis of Lumbar Spine Undergoing Extension.
Computer Modeling in Engineering and Sciences. 29(2):55-62. 2008.
- C. Bajaj, Y. Zhang, G. Xu.
Physically-based Texture Synthesis using A Coupled Finite Element System.
Lecture Notes in Computer Science. 4975:344-357, 2008.
- Y. Bazilevs, V. M. Calo, T. J.R. Hughes, Y. Zhang.
Isogeometric Fluid-Structure Interaction: Theory, Algorithms and Computations.
Computational Mechanics. 43:3-37, 2008.
- Y. Cheng, C. Chang, Z. Yu, Y. Zhang, M. Sun, T.S. Leyh, M. Holst, J.A. McCammon.
Diffusional Channeling in the Sulfate Activating Complex:
combined continuum modeling and coarse-grained Brownian dynamics studies.
Biophysical Journal. 95(10):4659-67, 2008.
- J. Isaksen, Y. Bazilevs, T. Kvamsdal, Y. Zhang,
J. H. Kaspersen, K. Waterloo, B. Romner, T. Ingebrigtsen.
Determination of Wall Tension in Cerebral Artery
Aneurysms by Numerical Simulation.
Stroke. 39:3172-3178, 2008.
- Y. Zhang, Y. Bazilevs, S. Goswami, C. Bajaj, T. J.R. Hughes.
Patient-Specific Vascular NURBS Modeling for
Isogeometric Analysis
of Blood Flow. Computer Methods in Applied Mechanics and
Engineering (CMAME). 196(29-30):2943-2959, 2007. (pdf) (html)
- M. S. Wochner, Y. Zhang, Y. A. Ilinskii, M. F. Hamilton,
E. A. Zabolotskaya. Influence of Inhomogeneity and Geometry on Lung
Response to Low-Frequency Underwater Sound. Journal of the Acoustical
Society of America. 122(5):2957, 2007.
- Y. Cheng, J. Suen, D. Zhang, S. Bond, Y. Zhang, Y. Song, N. Baker, C. Bajaj, M. J. Holst, J. A. McCammon.
Finite Element Analysis of the Time-Dependent
Smoluchowski Equation
for Acetylcholinesterase Reaction Rate Calculations.
Biophysical Journal. 92:3397-3406, 2007.
- C. Bajaj, J. T. Oden, K. R. Diller, J. C. Browne, J. Hazle, I. Babuska, J. Bass,
L. Bidaut, L. Demkowicz, A. Elliott, Y. Feng, D. Fuentes, S. Prudhomme, R. J. Stafford, Y. Zhang.
Using Cyber-infrastructure for Dynamic Data Driven Laser Treatment of Cancer.
Lecture Notes in Computer Science, 4487: 972-979, 2007.
- J. T. Oden, K. R. Diller, C. Bajaj, J. C. Browne, J. Hazle,
I. Babuska, J. Bass, L. Demkowicz, A. Elliott, Y. Feng, D. Fuentes, S. Prudhomme,
M. N. Rylander, R. J. Stafford, Y. Zhang.
Dynamic
Data-Driven Finite Element Models for Laser Treatment of Cancer.
Journal of Numerical Methods for Partial Differential Equations,
23(4):904-922, 2007.
- Y. Zhang, G. Xu, C. Bajaj. Quality Meshing of Implicit
Solvation Models of Biomolecular Structures. The special issue
of
Computer Aided Geometric Design (CAGD) on Applications of Geometric
Modeling in the Life
Sciences, 23(6):510-530, 2006. (pdf) (html)
- Y. Bazilevs, V. Calo, Y. Zhang, T. J.R. Hughes. Isogeometric Fluid-Structure Interaction Analysis with Applications to Arterial Blood Flow. Computational
Mechanics, 38(4-5):310-322, 2006.
- M. N. Rylander, Y. Feng, Y. Zhang, J. Bass, R. J. Stafford,
J. Hazle, K. R. Diller.
Optimizing Heat Shock Protein Expression Induced by Prostate Cancer Laser Therapy Through Predictive Computational Models. Journal of Biomedical Optics,
11(4):41113-41128, 2006.
- J. T. Oden, K. R. Diller, C. Bajaj, J. C. Browne, J. Hazle,
I. Babuska, J. Bass, L. Demkowicz, Y. Feng, D. Fuentes, S. Prudhomme,
M. N. Rylander, R. J. Stafford, Y. Zhang.
Development of a Computational Paradigm for Laser Treatment of
Cancer. Lecture Notes in Computer Science,
3993: 530-537, 2006.
- W. K. Liu, Y. Liu, D. Farrell, L. Zhang, X. Wang, Y. Fukui, N. Patankar, Y. Zhang, C. L. Bajaj, J. Lee, J. Hong, X. Chen, H. Hsu.
Immersed Finite Element Method and Its Applications to
Biological Systems. Computer Methods in Applied Mechanics and
Engineering (CMAME), 195(13-16):1722-1749, 2006.
- Y. Zhang, C. Bajaj. Adaptive and Quality
Quadrilateral/Hexahedral Meshing from Volumetric Data. Computer
Methods in Applied Mechanics and Engineering (CMAME), 195(9-12):942-960, 2006. (pdf) (html)
- Y. Zhang, C. Bajaj, B-S. Sohn. 3D Finite Element Meshing from Imaging Data. The special issue of
Computer Methods in Applied Mechanics and Engineering (CMAME) on
Unstructured Mesh Generation, 194(48-49):5083-5106, 2005. (pdf) (html)
- D. Zhang, J. Suen, Y. Zhang, Y. Song, Z. Radic, P. Taylor, M. J. Holst, C. Bajaj, N. A. Baker, J. A. McCammon.
Tetrameric Mouse Acetylcholinesterase: Continuum Diffusion Rate Calculations by Solving the Steady-State Smoluchowski
Equation Using Finite Element Methods. Biophysical
Journal, 88(3):1659-1665, 2005.
- Y. Song, Y. Zhang, C. Bajaj, N. Baker. Continuum Diffusion Reaction Rate Calculations of Wild Type and Mutant Mouse
Acetylcholinesterase: Adaptive Finite Element Analysis. Biophysical Journal 87(3):1558-1566, 2004.
(abstract)
- Y. Song, Y. Zhang, T. Shen, C. Bajaj, J. McCammon, N. Baker. Finite Element Solution of the Steady-state
Smoluchowski Equation for Rate Constant Calculations. Biophysical Journal, 86(4):2017-2029, 2004.
- Z. Zheng, D. Guo, Y. Zhang, Z. Hou. Dynamic Analysis of Large-scale Flexible Systems for Free-free Space
Structures. Philosophical Transactions of the Royal Society of London Series A, Mathematical, Physical and Engineering
Sciences, 359(1788): 2209-2229, 2001. (abstract)
- S. Shen, Y. Zhang, D. Li, Z. Zheng. Experiment and Analysis on Refrigerator Vibration Reduction and Noise Control.
Journal of Experimental Mechanics (China), 13(4): 574-578, Dec. 1998. (abstract)
Conference Publications:
- J. Qian, Y. Zhang, W. Wang, A. C. Lewis, M.A. S. Qidwai, A. B. Geltmacher.
Quality Improvement of Non-Manifold Hexahedral Meshes for Critical Feature
Determination of Microstructure Materials.
17th International Meshing Roundtable, pp. 211-230. Salt Lake City, Utah. Oct. 25-28, 2009.
- X. Liang, M. Ebeida, Y. Zhang.
Guaranteed-Quality All-Quadrilateral Mesh Generation with Feature Preservation.
17th International Meshing Roundtable, pp. 45-64. Salt Lake City, Utah. Oct. 25-28, 2009.
- M. Ebeida, E. Mestreau, Y. Zhang, S. Dey.
Mesh Insertion of Hybrid Meshes.
17th International Meshing Roundtable, pp. 359-376. Salt Lake City, Utah. Oct. 25-28, 2009.
- E. Johnson, Y. Zhang, K. Shimada.
Using Conformal Mapping and Springs to Determine Aneurysm Wall Thickness.
17th International Meshing Roundtable, pp. 397-414. Salt Lake City, Utah. Oct. 25-28, 2009.
- R. Zhang, Y. Zhang, K. P. Lam, D. Archer.
A Prototype Mesh Generation Tool Development for CFD Simulations in Architecture Domain.
IBPSA (International Building Performance Simulation Association) Building Simulation.
Glasgow, Scotland. July. 27-30, 2009.
- W. Wang, Y. Zhang, J. Qian.
Error-Bounded Solid NURBS Construction for Navy Structures Using Offsets.
Marine 2009.
Trondheim, Norway. June 15-17, 2009.
- Y. Zhang, W. Wang, X. Liang, Y. Bazilevs, M.-C. Hsu, T. Kvamsdal, R. Brekken, J. Isaksen.
High Fidelity Tetrahedral Meshing from Imaging Data for Fluid-Structure Interaction Analysis of Aneurysms.
International Conference on Computational & Experimental Engineering and Sciences.
Phuket, Thailand. April 8-13, 2009.
- Y. Bazilevs, M.-C. Hsu, Y. Zhang, W. Wang, X. Liang, T. Kvamsdal, R. Brekken, J. Isaksen.
Computational Vascular Fluid-Structure Interaction: Methodology and Application to Cerebral Aneurysms.
15th International Conference on Finite Elements in Flow Problems.
Tokyo, Japan. April 1-3, 2009.
- R. Li, Y. Zhang, D. Archer.
Computation of Air Flow in CMU's Intelligent Workplace and
Its Effect on Occupant Comfort and Health.
ASME 2nd International Conference on Energy Sustainability.
Jacksonville, FL. Aug. 10-14, 2008.
- Y. Bazilevs, V. M. Calo, T. J.R. Hughes, Y. Zhang.
Modeling and Computation of Patient-Specific Vascular
Fluid-Structure Interaction using Isogeometric Analysis.
The 6th International Conference on Computation of Shell
and Spatial Structures IASS-IACM 2008: Spanning Nano to Mega,
J.F. Abel and J.R. Cooke (eds.). Cornell University, Ithaca, NY.
May 28-31, 2008.
- C. Bajaj, Y. Zhang, G. Xu.
Physically-based Texture Synthesis using A Coupled Finite
Element System. Geometric Modeling and Physics (GMP), pp. 344-357. Hanzhou, China. April 23-25, 2008.
- Y. Zhang, B. C. Cheng, C. Oh, J. L. Spehar, J. Burgess.
Dynamic Neural Foramina Cross Section Measurement and Kinematic
Analysis of Lumbar Spine Undergoing Extension.
International Conference on Computational & Experimental
Engineering and Sciences. 293(1):1-6. Honolulu, Hawaii. Mar. 17-22, 2008.
- Y. Zhang, T. J.R. Hughes, C. Bajaj. Automatic 3D Meshing
for A Domain with Multiple Materials. Proceedings of 16th
International Meshing Roundtable, pp. 367-386. Seattle, Washington. Oct. 14-17,
2007. (pdf) (html)
- J. F. Shepherd, Y. Zhang, C. J. Tuttle, C. T. Silva.
Quality Improvement and Boolean-like Cutting Operations in Hexahedral Meshes.
. The 10th ISGG Conference on Numerical Grid Generation.
FORTH, Crete, Greece. Sept. 16-20, 2007.
- C. Bajaj, J. T. Oden, K. R. Diller, J. C. Browne, J. Hazle,
I. Babuska, J. Bass, L. Bidaut, L. Demkowicz, A. Elliott, Y. Feng,
D. Fuentes, S. Prudhomme, R. J. Stafford, Y. Zhang.
Using Cyber-Infrastructure for Dynamica Data Driven Laser
Treatment of Cancer. Computatinal Science-ICCS. Beijing,
China. May 27-30, 2007.
- Y. Bazilevs, V. M. Calo, J. A. Cottrell, T. J.R. Hughes, Y. Zhang.
Isogeometric Modeling and Analysis for Naval Ship Structures.
Marine. Barcelona, Spain. June 5-7, 2007.
- Y. Bazilevs, V. M. Calo, Y. Zhang, T. J.R. Hughes.
A Fully Integrated Approach to Fluid-Structure Interaction.
Coupled Problems. Ibiza, Spain. May 21-23, 2007.
- Y. Zhang, Y. Bazilevs, S. Goswami, C. Bajaj, T. J.R. Hughes.
Patient-Specific Vascular NURBS Modeling for Isogeometric Analysis
of Blood Flow. Proceedings of 15th International Meshing
Roundtable, pp. 73-92. Birmingham, AL. September 17-20, 2006. (pdf) (html)
- Y. Bazilevs, Y. Zhang, V. Calo, S. Goswami, C. Bajaj, T. J.R. Hughes.
Isogeometric Analysis of Blood Flow: a NURBS-based Approach.
CompIMAGE. Coimbra, Portugal. October 20-21, 2006. (pdf)
- C. Bajaj, S. Goswami, Z. Yu, Y. Zhang, Y. Bazilevs, T. J.R. Hughes.
Patient Specific Heart Models from High Resolution CT.
CompIMAGE. Coimbra, Portugal. October 20-21, 2006. (pdf)
- J. T. Oden, K. R. Diller, C. Bajaj, J. C. Browne, J. Hazle,
I. Babuska, J. Bass, L. Demkowicz, Y. Feng, D. Fuentes, S. Prudhomme,
M. N. Rylander, R. J. Stafford, Y. Zhang.
Development of a Computational Paradigm for Laser Treatment of
Cancer. International Conference on Computational Science
(3): 530-537, 2006.
- Y. Zhang, C. Bajaj, G. Xu. Surface Smoothing and Quality
Improvement of Quadrilateral/Hexahedral Meshes with Geometric
Flow. Proceedings of 14th International Meshing
Roundtable, pp. 449-468. San Diego, CA. September 11-14, 2005. (pdf) (html)
- Y. Zhang, C. Bajaj. Adaptive and Quality Quadrilateral/Hexahedral Meshing from Volumetric Data. Proceedings of 13th International Meshing Roundtable, pp. 365-376. Williamsburg, VA. September 19-22, 2004. (pdf) (html)
- Y. Zhang, C. Bajaj, B-S. Sohn. Adaptive
and Quality 3D Meshing from Imaging Data. Proceedings of 8th ACM Symposium
on Solid Modeling and Applications, pp. 286-291. Seattle, WA. June 16-20, 2003. (pdf)
Technical Reports:
- Y. Bazilevs, J. R. Gohean, T. J.R. Hughes, R. D. Moser, Y. Zhang.
Patient-Specific Isogeometric Fluid-Structure Interaction Analysis of
Thoracic Aortic Blood Flow due to Implantation of the Jarvik 2000 Left
Ventricular Assist Device. ICES Report 08-14, the University of Texas at
Austin.
2008.
- J. Isaksen, Y. Bazilevs, T. Kvamsdal, Y. Zhang, J.
H. Kaspersen, K. Waterloo, B. Romner, T. Ingebrigtsen.
Determination of Wall Tension in Cerebral Artery Aneurysms by Numerical
Simulation. ICES Report 07-18, the University of Texas at
Austin.
2007.
- Y. Zhang, G. Xu, C. Bajaj. Quality Meshing of Implicit Solvation
Models of Biomolecular Structures. ICES Technical Report 04-61, the University of
Texas at Austin, 2004. (pdf) (html)
- W. K. Liu, G. Chen, X. Wang, Y. Zhang, C. Bajaj, T. Hughes. A Study of a Three-Dimensional Heart Model Using
Immersed Continuum Method. ICES Technical Report, 2004.
- Y. Zhang, C. Bajaj. Finite Element Meshing for Cardiac Analysis. ICES Technical Report 04-26, the University of
Texas at Austin, 2004. (pdf) (html)
- C. Bajaj, Y. Zhang, G. Xu. Physically-based Surface Texture Synthesis.
Manuscript, 2003.
- Y. Zhang, C. Bajaj, B-S. Sohn. Adaptive Multiresolution and Quality 3D Meshing from Imaging Data. CS and ICES
Technical Report (TR-02-63, 02-42), the University of Texas at Austin, December, 2002. (pdf)