A C D E F G H I L M N O P R S T V W

T

TestB3 - class org.aisb.bio.tests.TestB3.

This is a set of unit tests for assignment B3.

TestB3() - Constructor for class org.aisb.bio.tests.TestB3

TestB4 - class org.aisb.bio.tests.TestB4.

This is the testing framework for assignment B4, the image classification assignment.

TestB4() - Constructor for class org.aisb.bio.tests.TestB4

testCanExtractFeatures() - Method in class org.aisb.bio.tests.TestB4

Test to see if we can extract features from a known image.

testCanReadAnImage() - Method in class org.aisb.bio.tests.TestB4

Test to see if we can read a single image shipped with the application in a known location.

testCreateASequence() - Method in class org.aisb.bio.tests.TestB3

Test the creation of a simple nucleotide sequence from a string.

testEuclideanMeanClassifierWithFourDimensions() - Method in class org.aisb.bio.tests.TestB4

Test our Euclidean mean classifier with four-dimensional data.

testEuclideanMeanClassifierWithOneDimension() - Method in class org.aisb.bio.tests.TestB4

Test our Euclidean mean classifier with one-dimensional data.

testLoadingAnOrganism() - Method in class org.aisb.bio.tests.TestB3

Test loading an AsexualOrganism from a simple text file.

testMaxScore() - Method in class org.aisb.bio.tests.TestB3

Test that our PSSM object can really calculate the maximum score of a PSSM.

testMutationFunction() - Method in class org.aisb.bio.tests.TestB3

Test that our mutation function is actually mutating.

testSomeKnownSequences() - Method in class org.aisb.bio.tests.TestB3

Calculate the fitness of a couple of fixed sequences for which the fitness is already known.

toArray() - Method in class org.aisb.bio.things.Sequence

toArray(Object[]) - Method in class org.aisb.bio.things.Sequence

toString() - Method in class org.aisb.bio.things.Sequence

toString() - Method in class org.aisb.bio.things.evolution.AsexualOrganism

train(String, Object) - Method in class org.aisb.bio.tools.Classifier

Feed training data to the classifier.

train(String, Object) - Method in class org.aisb.bio.tools.EuclideanMeanClassifier

type - Variable in class org.aisb.bio.things.Sequence