Uses of Class
org.aisb.bio.things.Sequence

Packages that use Sequence

org.aisb.bio.things.evolution
org.aisb.bio.tools

Uses of Sequence in org.aisb.bio.things.evolution

Methods in org.aisb.bio.things.evolution that return Sequence

Sequence

AsexualOrganism.getGenotype()

Methods in org.aisb.bio.things.evolution with parameters of type Sequence

void	AsexualOrganism.setGenotype(Sequence genotype)

Uses of Sequence in org.aisb.bio.tools

Methods in org.aisb.bio.tools that return Sequence

Sequence	SequenceFetcher.getSequence()
Sequence	SequenceAligner.getFirstSequence() Get the first sequence to align.
Sequence	SequenceAligner.getSecondSequence() Get the second sequence to align.

Methods in org.aisb.bio.tools with parameters of type Sequence

void	SequenceAligner.setFirstSequence(Sequence s1) Set the first sequence to align.
void	SequenceAligner.setSecondSequence(Sequence s2) Set the second sequence to align.
int	PSSMFitnessFunction.fitness(Sequence inputSequence)
int	FitnessFunction.fitness(Sequence seq) Calculate the fitness of this sequence.