Uses of Class
org.aisb.bio.things.Monomer

Packages that use Monomer

org.aisb.bio.things
org.aisb.bio.things.evolution
org.aisb.bio.tools

Uses of Monomer in org.aisb.bio.things

Subclasses of Monomer in org.aisb.bio.things

class	AminoAcid This class describes the set of amino acids that make up protein sequences.
class	Nucleotide This subclass of monomer specifically encodes nucleotides.

Methods in org.aisb.bio.things that return Monomer

static Monomer	Monomer.getByName(String name) Given the name of a monomer, perhaps such as "tyrosine" or "fructose", return the representation of that monomer.
static Monomer	Monomer.getByCode(char code) Given the one-character code of a monomer, return the representation of that monomer.
static Monomer	Monomer.getByCode(Character code) Given the one-character code of a monomer, return the representation of that monomer.
static Monomer	Monomer.getByNumber(int number) Given the numberic code for a monomer, return the representation of that monomer.
static Monomer	Monomer.getByNumber(Integer number) Given the numberic code for a monomer, return the representation of that monomer.

Uses of Monomer in org.aisb.bio.things.evolution

Methods in org.aisb.bio.things.evolution that return Monomer

Monomer

Mutator.mutate(Monomer oldNucleotide) Perform the mutation.

Methods in org.aisb.bio.things.evolution with parameters of type Monomer

Monomer

Mutator.mutate(Monomer oldNucleotide) Perform the mutation.

Uses of Monomer in org.aisb.bio.tools

Methods in org.aisb.bio.tools with parameters of type Monomer

int	SimilarityMatrixComparator.compare(Monomer m1, Monomer m2)
abstract int	MonomerComparator.compare(Monomer m1, Monomer m2)
int	IdentityComparator.compare(Monomer m1, Monomer m2)