org.aisb.bio.assignments
Class HomeworkB3

java.lang.Object
  org.aisb.bio.assignments.HomeworkB3

public class HomeworkB3

extends Object

This implements the exact behavior called for by assignment B3, "Simulating Promoter Mutation and Selection".

The individual organisms are represented by AsexualOrganism objects. The mutation model is captured in the Mutator object. The interface for fitness functions in general is defined by FitnessFunction, and the specific implementation via a PSSM is PSSMFitnessFunction.

This program is meant to be invoked by an accompanying shell script. That shell script will only work when run from the directory it's distributed in, and only if gnuplot is in the user's current path.

Author:

Doug DeJulio

Constructor Summary

HomeworkB3()

Method Summary

static void

main(String[] args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HomeworkB3

public HomeworkB3()

Method Detail

main

public static void main(String[] args)
                 throws Exception

Throws:

Exception