A C D E F G H I L M N O P R S T V

T

TestB3 - class org.aisb.bio.tests.TestB3.

This is a set of unit tests for assignment B3.

TestB3() - Constructor for class org.aisb.bio.tests.TestB3

testCreateASequence() - Method in class org.aisb.bio.tests.TestB3

Test the creation of a simple nucleotide sequence from a string.

testLoadingAnOrganism() - Method in class org.aisb.bio.tests.TestB3

Test loading an AsexualOrganism from a simple text file.

testMaxScore() - Method in class org.aisb.bio.tests.TestB3

Test that our PSSM object can really calculate the maximum score of a PSSM.

testMutationFunction() - Method in class org.aisb.bio.tests.TestB3

Test that our mutation function is actually mutating.

testSomeKnownSequences() - Method in class org.aisb.bio.tests.TestB3

Calculate the fitness of a couple of fixed sequences for which the fitness is already known.

toArray() - Method in class org.aisb.bio.things.Sequence

toArray(Object[]) - Method in class org.aisb.bio.things.Sequence

toString() - Method in class org.aisb.bio.things.Sequence

toString() - Method in class org.aisb.bio.things.evolution.AsexualOrganism

type - Variable in class org.aisb.bio.things.Sequence