|B8: How to select a sub-set.|
Jmol commands, such as Color, operate on the entire molecule by default. It is possible to modify this behavior by selecting groups of atoms. Once this group of atoms is selected, all subsequent Jmol commands are only applied to the selected atoms.
Open up the menu and select "Select" (the number after select refers to the number of atoms that are currently selected). There are three useful selections with the select sub-menu:
Two examples are of selecting groups of residues are listed below (expected menus shown on the left):
B: Do the following two steps to draw all hydrophobic residues as spacefill: