B7: How to display hydrogen bonds.
Hydrogen bonds can be displayed using a simple two step menu selection, for hydrogen bonds:
Options¬Display Hydrogen Bonds.
The color of the hydrogen bonds are those of the two connecting atoms, i.e. donor and acceptor. Therefore it may be difficult to see them.
Note that H-bonds are only displayed between elements of secondary structure (NH-->O=C). To assess H-bonds between a protein and its small molecule ligand, use one of the distance measures to determine if the donor and acceptor are <3.2 Å apart.
