Biochemistry I   Spring & Fall Terms

(Fos-Jun & NFAT)-DNA Complex Structure

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  Fos-DNA.
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  NFAT-DNA.
  Fos-Jun "Zipper"

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The Fos-Jun, and NFAT DNA-Binding Domains Complexed to a Specific Site.
The Fos-Jun heterodimer is a human transcriptional activator (AP-1) that binds to DNA in many promoter regions. NFAT (nuclear factor of activated T cells) activates transcription at several promoters involved with immune system induction. At the interleukin-2 promoter, all three proteins bind cooperatively to stimulate transcription. This model shows the structure of that complex.
The DNA, 20 bp of IL-2 regulatory region DNA, is shown as Sticks, colored green.
The bZIP proteins, Fos (red) and Jun (yellow), are shown as Cartoons.
(See Campbell, Fig. 10.29 for a picture of another Fos-Jun DNA complex.)
NFAT is shown as Cartoons, colored Structure.

The first three"Highlight" buttons display DNA backbone and base-specific interactions. The amino acids that participate in DNA recognition are labeled (one-letter code) and shown Ball & Stick, colored CPK. The other protein residues are displayed as Backbone, colored as described above. DNA groups within 4 Å of the highlighted amino acids are colored CPK.
1. Fos-DNA
2. Jun-DNA
3. NFAT-DNA
4. Fos-Jun "Zipper": Hydrophobic side chains in the dimer interface are Spacefill, colored CPK. The hydrophilic side chains are shown as Sticks. Can you identify the "3 and 4" repeat pattern of hydrophobic residues characteristic of coiled-coil proteins? (See Campbell, Fig. 10.28 for a helical wheel diagram where positions 1 and 5 should be indicated.)

This structure is described in Chen, L., Glover, J. N., Hogan, P. G., Rao, A., Harrison, S. C. (1998) "Structure of the DNA-binding domains from NFAT, Fos and Jun bound specifically to DNA. Nature 392: 42.     PubMed Abstract.

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8.21.04