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Download Jmol: http://jmol.sourceforge.net/
Download Java: http:/www.java.com/
Structure Database: The RCSB Protein Data Bank of proteins and nucleic acids.
DNA/Protein Manipulation & Alignment
DNA translation tool: Expasy
DNA manipulation tool: ApE
Restriction Site Mapping:NEBcutter
DNA alignment:blastn
Protein alignment:blastp